Users can upload ped, map, and phe files for the analysis. Birthyear,
Estimated Breeding Values (EBV), and sex information for each
individual may be defined in a sample information txt file.
Please --download the example
datasets-- and check the tutorial for detailed
information about the file formats. The PED, MAP, phenotype, and sample
information files should be named with the suffix of
“.ped”, “.map”, ”.phe”,
and “.txt”, respectively.
Please note, users can upload a
file with a maximum size of 50MB. Datasets larger than that should
be uploaded via FTP or analyzed locally with the
High levels of linkage disequilibrium (LD) and low quality SNPs affect
both performance and efficiency of GM. High
LD and low quality SNPs were
pruned by default. Please note, analysis of large dataset could be very
slow when turning off this setting.
LD pruning and
Step 3: Submit your job
Be notifled by email (Tick this box if you want to be notified by email when
the results are available)
if available,the title will be included in the subject of the
email and can be used as a way to identify your analysis.
Due to security concerns, the FTP functionality
is temporarily disabled. If the file size is larger than 50MB,
please use the standalone package